PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_15171_iso_2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 154aa    MW: 17642.4 Da    PI: 8.4567
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_15171_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.6e-172877255
                                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                         +y+G+r +k +g+WvAeIr+p   +kr r++lg++ ++  Aa+a++ a  +l+g
  cra_locus_15171_iso_2_len_896_ver_3 28 QYRGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPVAAARAYDTAVFYLRG 77
                                         69*****99.**********9...336*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-292786IPR001471AP2/ERF domain
PfamPF008471.7E-102877IPR001471AP2/ERF domain
SMARTSM003802.4E-362891IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-212886IPR016177DNA-binding domain
PROSITE profilePS5103222.0892885IPR001471AP2/ERF domain
CDDcd000188.81E-272886No hitNo description
PRINTSPR003672.0E-112940IPR001471AP2/ERF domain
PRINTSPR003672.0E-116787IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MMGDGGEKRK QIRETQRSTE KDQEEKRQYR GIRMRKWGKW VAEIREPNKR SRIWLGSYSS  60
PVAAARAYDT AVFYLRGPTA RLNFPECIVE DDELLHHHDL SAAAIXKKAT EVGARVDALQ  120
IHHQPASSES KSAPTRFEKP DLNEYPSPES SDEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A7e-152785463ATERF1
2gcc_A7e-152785463ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238136.13e-67PREDICTED: ethylene-responsive transcription factor ERF010-like
SwissprotO221742e-47ERF08_ARATH; Ethylene-responsive transcription factor ERF008
SwissprotQ9FH942e-47ERF10_ARATH; Ethylene-responsive transcription factor ERF010
TrEMBLA0A068TYD86e-72A0A068TYD8_COFCA; Uncharacterized protein
STRINGSolyc04g078640.1.12e-66(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390